The Judges had their third-best showing ever in the standings, scoring the most points in program history.
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With two days of rain canceling the final round of the NCAA Division III Softball regional at Ithaca, the host Bombers advance as the only unbeaten team in the regional.
Scottie Todd two-hit the Rams in the squad's first elimination game, while Sydney Goldman tossed a three-hitter in game two.
Scottie Todd homered for the Judges' first two runs, but Brandeis mustered just two more hits the rest of the way.
The Judges will meet Penn State-Berks in the opening round at Ithaca.
Todd, Jolie Fujita, Scottie Todd are first-team All-UAA selections, Keri Lehtonen and Marley Felder are on the second team.
The Judges were edged, 3-2, in the opener of their regular-season finale and fell 11-3 in the second game.
Jolie Fujita went 4-7 with three RBI, three runs scored and her fourth homer of the season.